STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFJ42290.1Pilin (type 1 fimbria component protein). (181 aa)    
Predicted Functional Partners:
SFJ42355.1
Outer membrane usher protein PapC.
 
  0.924
SFJ42397.1
Chaperone protein PapD.
 
   0.913
SFJ95691.1
Outer membrane usher protein FimD/PapC.
 
  0.898
SFJ95714.1
P pilus assembly protein, chaperone PapD.
 
   0.897
SFJ48396.1
Outer membrane usher protein PapC.
 
  0.894
SFJ48428.1
Chaperone protein PapD.
 
   0.887
SFI89165.1
Outer membrane usher protein.
 
  0.812
SFI53213.1
Outer membrane usher protein.
 
  0.809
SFI89205.1
P pilus assembly protein, chaperone PapD.
 
   0.789
SFI53263.1
P pilus assembly protein, chaperone PapD.
 
   0.783
Your Current Organism:
Xenorhabdus mauleonii
NCBI taxonomy Id: 351675
Other names: CIP 109075, DSM 17908, X. mauleonii, Xenorhabdus mauleonii Tailliez et al. 2006, Xenorhabdus sp. VC01, strain VC01
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.