STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFK13732.1Protein of unknown function. (87 aa)    
Predicted Functional Partners:
SFJ56027.1
VRR-NUC domain-containing protein.
  
     0.567
SFK13605.1
Hypothetical protein.
       0.516
SFK13633.1
Prophage endopeptidase.
       0.516
SFK13659.1
Hypothetical protein.
       0.516
SFK13684.1
Hypothetical protein.
       0.516
SFK13706.1
Phage holin, lambda family.
       0.516
SFJ37310.1
Deoxyribonuclease-1.
  
     0.491
SFJ31060.1
Major Facilitator Superfamily protein.
  
     0.484
SFJ44121.1
Major Facilitator Superfamily protein.
  
     0.479
ligB
DNA ligase (NAD+); Catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction. Belongs to the NAD-dependent DNA ligase family. LigB subfamily.
  
     0.432
Your Current Organism:
Xenorhabdus mauleonii
NCBI taxonomy Id: 351675
Other names: CIP 109075, DSM 17908, X. mauleonii, Xenorhabdus mauleonii Tailliez et al. 2006, Xenorhabdus sp. VC01, strain VC01
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.