STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFK19382.1Site-specific recombinase XerD. (333 aa)    
Predicted Functional Partners:
SFK19020.1
Uncharacterized protein YjcR.
  
    0.750
SFK19129.1
Bacteriophage replication gene A protein (GPA).
 
  
 0.721
xerC
Tyrosine recombinase XerC subunit; Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. Binds cooperatively to specific DNA consensus sequences that are separated from XerD binding sites by a short central region, forming the heterotetrameric XerC-XerD complex that recombines DNA substrates. The complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell division. It also contributes to the segregational stability of plasmids. In the complex XerC specifically exc [...]
  
 
 
 0.718
SFK19041.1
Phage portal protein, PBSX family.
  
    0.709
SFK19361.1
Hypothetical protein.
       0.709
SFK18981.1
Phage major capsid protein, P2 family.
  
    0.690
SFK19003.1
Phage capsid scaffolding protein (GPO) serine peptidase.
  
  
 0.681
SFJ52061.1
Bacteriophage replication gene A protein (GPA).
 
  
 0.664
SFK19339.1
Protein of unknown function.
       0.664
SFK19091.1
Terminase-like family protein.
 
    0.649
Your Current Organism:
Xenorhabdus mauleonii
NCBI taxonomy Id: 351675
Other names: CIP 109075, DSM 17908, X. mauleonii, Xenorhabdus mauleonii Tailliez et al. 2006, Xenorhabdus sp. VC01, strain VC01
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.