STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFB91199.1Creatinase; Identified by match to protein family HMM PF00557; match to protein family HMM PF01321. (371 aa)    
Predicted Functional Partners:
EFB91201.1
Transketolase; Identified by match to protein family HMM PF00456; match to protein family HMM PF02779; match to protein family HMM PF02780.
 
 
 0.823
EFB91660.1
Inosine 5-monophosphate dehydrogenase; Identified by match to protein family HMM PF00478; match to protein family HMM PF00571.
   
   0.814
EFB91513.1
Putative shikimate dehydrogenase; This gene contains a nucleotide ambiguity which may be the result of a sequencing error; identified by match to protein family HMM PF01488; match to protein family HMM PF08501.
    
  0.810
EFB91200.1
Identified by match to protein family HMM PF02677.
       0.796
aroQ
3-dehydroquinate dehydratase, type II; Catalyzes a trans-dehydration via an enolate intermediate. Belongs to the type-II 3-dehydroquinase family.
 
 
  0.697
EFB91198.1
Rubredoxin; Identified by match to protein family HMM PF00301.
     
 0.588
EFB91202.1
Translation initiation factor SUI1; Identified by match to protein family HMM PF01253.
       0.556
EFB91203.1
Hypothetical protein; Identified by glimmer; putative.
       0.541
lysS
lysine--tRNA ligase; Identified by match to protein family HMM PF00152; match to protein family HMM PF01336; match to protein family HMM TIGR00499; Belongs to the class-II aminoacyl-tRNA synthetase family.
 
   0.526
gcvT
Aminomethyltransferase; The glycine cleavage system catalyzes the degradation of glycine.
  
 0.526
Your Current Organism:
Pyramidobacter piscolens
NCBI taxonomy Id: 352165
Other names: P. piscolens W5455, Pyramidobacter piscolens W5455, Pyramidobacter piscolens str. W5455, Pyramidobacter piscolens strain W5455, Synergistetes bacterium W5455
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.