STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFB91100.1ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005; match to protein family HMM PF08352; match to protein family HMM TIGR01727; Belongs to the ABC transporter superfamily. (330 aa)    
Predicted Functional Partners:
EFB91099.1
ABC transporter, permease protein; Identified by match to protein family HMM PF00528.
 
  0.988
EFB91885.1
ABC transporter, permease protein; Identified by match to protein family HMM PF00528.
 
 
 
  0.918
EFB91124.1
ABC transporter, permease protein; Identified by match to protein family HMM PF00528.
 
 
 
  0.906
oppB
Oligopeptide transport system permease protein OppB; Identified by match to protein family HMM PF00528.
 
  0.901
EFB89711.1
ABC transporter, permease protein; Identified by match to protein family HMM PF00528.
 
 
  0.899
EFB91105.1
ABC transporter, permease protein; Identified by match to protein family HMM PF00528.
 
 
 
  0.898
EFB90518.1
Efflux ABC transporter, permease protein; Identified by match to protein family HMM PF02687.
 
      0.892
EFB91101.1
ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005; match to protein family HMM PF08352; match to protein family HMM TIGR01727; Belongs to the ABC transporter superfamily.
 
 
 
0.869
EFB91719.1
ABC transporter, permease protein; Identified by match to protein family HMM PF00528.
 
 
 
  0.857
EFB91102.1
ABC transporter, substrate-binding protein, family 5; Identified by match to protein family HMM PF00496.
 
  0.841
Your Current Organism:
Pyramidobacter piscolens
NCBI taxonomy Id: 352165
Other names: P. piscolens W5455, Pyramidobacter piscolens W5455, Pyramidobacter piscolens str. W5455, Pyramidobacter piscolens strain W5455, Synergistetes bacterium W5455
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