STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rfbA-3O-antigen export system permease protein RfbA; Identified by match to protein family HMM PF01061. (258 aa)    
Predicted Functional Partners:
EFB89638.1
ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.
 0.998
EFB91063.1
ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.
 0.993
glf
UDP-galactopyranose mutase; Identified by match to protein family HMM PF03275; match to protein family HMM TIGR00031.
  
  
 0.764
EFB89637.1
Glycosyltransferase, group 1 family protein; Identified by match to protein family HMM PF00534.
       0.661
EFB91062.1
ABC-2 type transporter; Identified by match to protein family HMM PF01061.
  
  
 
0.520
EFB89636.1
Glycosyltransferase, family 8; Identified by match to protein family HMM PF01501.
       0.486
EFB91072.1
CDP-glycerol:poly(glycerophosphate) glycerophosphotransferase; Identified by match to protein family HMM PF04464.
  
  
 0.425
EFB90151.1
ABC transporter, permease protein; Identified by match to protein family HMM PF00528; match to protein family HMM TIGR01726.
    
  0.422
EFB89906.1
ABC transporter, permease protein; Identified by match to protein family HMM PF00528; match to protein family HMM TIGR01726.
    
  0.422
EFB90352.1
ABC transporter, permease protein; Identified by match to protein family HMM PF00528; match to protein family HMM TIGR01726.
    
  0.422
Your Current Organism:
Pyramidobacter piscolens
NCBI taxonomy Id: 352165
Other names: P. piscolens W5455, Pyramidobacter piscolens W5455, Pyramidobacter piscolens str. W5455, Pyramidobacter piscolens strain W5455, Synergistetes bacterium W5455
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.