STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFB89642.1Identified by match to protein family HMM PF02667; match to protein family HMM PF03553. (491 aa)    
Predicted Functional Partners:
EFB89643.1
Amidase; Identified by match to protein family HMM PF01425.
       0.732
EFB91782.1
Citrate transporter; Identified by match to protein family HMM PF02447; match to protein family HMM PF03600.
 
   
 0.580
EFB89644.1
Hypothetical protein; Identified by glimmer; putative.
       0.532
EFB89641.1
HutP; Identified by match to protein family HMM PF09021.
       0.520
EFB90636.1
Carbon starvation protein CstA; Identified by match to protein family HMM PF02554.
  
     0.510
EFB90108.1
3-oxoacid CoA-transferase, A subunit; Identified by match to protein family HMM PF01144; match to protein family HMM TIGR02429.
 
  
 0.497
EFB90109.1
3-oxoacid CoA-transferase, B subunit; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF01144; match to protein family HMM TIGR02428.
 
  
 0.465
Your Current Organism:
Pyramidobacter piscolens
NCBI taxonomy Id: 352165
Other names: P. piscolens W5455, Pyramidobacter piscolens W5455, Pyramidobacter piscolens str. W5455, Pyramidobacter piscolens strain W5455, Synergistetes bacterium W5455
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.