STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFB89583.1Peptidase; Identified by match to protein family HMM PF01546; match to protein family HMM PF07687. (398 aa)    
Predicted Functional Partners:
dpaL
Diaminopropionate ammonia-lyase; Identified by match to protein family HMM PF00291; match to protein family HMM TIGR01747; match to protein family HMM TIGR03528.
  
 0.784
EFB89582.1
C4-dicarboxylate anaerobic carrier; Identified by match to protein family HMM PF03606; match to protein family HMM PF03806.
       0.773
EFB89584.1
Hypothetical protein; Identified by glimmer; putative.
       0.732
dapF
Diaminopimelate epimerase; Catalyzes the stereoinversion of LL-2,6-diaminoheptanedioate (L,L-DAP) to meso-diaminoheptanedioate (meso-DAP), a precursor of L- lysine and an essential component of the bacterial peptidoglycan. Belongs to the CarB family.
   
 0.728
EFB89592.1
Pyridoxal-phosphate dependent protein; Identified by match to protein family HMM PF00291.
 
  
 0.711
EFB89585.1
Bacterial extracellular solute-binding protein, family 7; Identified by match to protein family HMM PF03480.
       0.707
rnfB
Ferredoxin; Part of a membrane-bound complex that couples electron transfer with translocation of ions across the membrane. Belongs to the 4Fe4S bacterial-type ferredoxin family. RnfB subfamily.
    
  0.637
EFB89581.1
Putative selenium metabolism hydrolase; Identified by match to protein family HMM PF01546; match to protein family HMM PF07687; match to protein family HMM TIGR03320; match to protein family HMM TIGR03526.
 
    
0.601
thrC
Threonine synthase; Catalyzes the gamma-elimination of phosphate from L- phosphohomoserine and the beta-addition of water to produce L- threonine.
 
 
   0.580
EFB89586.1
Hypothetical protein.
       0.508
Your Current Organism:
Pyramidobacter piscolens
NCBI taxonomy Id: 352165
Other names: P. piscolens W5455, Pyramidobacter piscolens W5455, Pyramidobacter piscolens str. W5455, Pyramidobacter piscolens strain W5455, Synergistetes bacterium W5455
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.