STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFB89590.1Peptidase; Identified by match to protein family HMM PF01546; match to protein family HMM PF07687. (393 aa)    
Predicted Functional Partners:
dpaL
Diaminopropionate ammonia-lyase; Identified by match to protein family HMM PF00291; match to protein family HMM TIGR01747; match to protein family HMM TIGR03528.
  
 0.965
thrC
Threonine synthase; Catalyzes the gamma-elimination of phosphate from L- phosphohomoserine and the beta-addition of water to produce L- threonine.
 
 
   0.836
EFB89592.1
Pyridoxal-phosphate dependent protein; Identified by match to protein family HMM PF00291.
 
  
 0.824
dapF
Diaminopimelate epimerase; Catalyzes the stereoinversion of LL-2,6-diaminoheptanedioate (L,L-DAP) to meso-diaminoheptanedioate (meso-DAP), a precursor of L- lysine and an essential component of the bacterial peptidoglycan. Belongs to the CarB family.
   
 0.728
EFB89588.1
Identified by match to protein family HMM PF01979; match to protein family HMM PF07908; match to protein family HMM PF07969.
 
     0.687
rnfB
Ferredoxin; Part of a membrane-bound complex that couples electron transfer with translocation of ions across the membrane. Belongs to the 4Fe4S bacterial-type ferredoxin family. RnfB subfamily.
    
  0.637
agcS-2
Amino acid carrier protein; Identified by match to protein family HMM PF01235; match to protein family HMM TIGR00835.
       0.580
EFB89593.1
Hypothetical protein; Identified by glimmer; putative.
       0.475
EFB91374.1
4Fe-4S binding domain protein; Identified by match to protein family HMM PF00037.
    
  0.472
EFB89583.1
Peptidase; Identified by match to protein family HMM PF01546; match to protein family HMM PF07687.
 
    
0.412
Your Current Organism:
Pyramidobacter piscolens
NCBI taxonomy Id: 352165
Other names: P. piscolens W5455, Pyramidobacter piscolens W5455, Pyramidobacter piscolens str. W5455, Pyramidobacter piscolens strain W5455, Synergistetes bacterium W5455
Server load: low (20%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.