STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFB91913.1Selenoprotein B, glycine/betaine/sarcosine/D-proline reductase family; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a premature stop; identified by match to protein family HMM PF07355; match to protein family HMM TIGR01918. (350 aa)    
Predicted Functional Partners:
EFB90368.1
Selenoprotein B, glycine/betaine/sarcosine/D-proline reductase domain protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a premature stop; identified by match to protein family HMM TIGR01918.
     0.944
grdE
Glycine reductase, subunit ABC; Identified by match to protein family HMM PF09338.
 
  
 0.942
EFB91914.1
Selenoprotein B, glycine/betaine/sarcosine/D-proline reductase domain protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a premature stop; identified by match to protein family HMM TIGR01918.
 
     0.925
EFB90215.1
Selenoprotein B, glycine/betaine/sarcosine/D-proline reductase domain protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a premature stop; identified by match to protein family HMM TIGR01918.
 
     0.885
EFB91840.1
Selenoprotein B, glycine/betaine/sarcosine/D-proline reductase domain protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a premature stop; identified by match to protein family HMM TIGR01918.
     0.821
grdE-2
Glycine reductase, subunit ABC; Identified by match to protein family HMM PF09338.
 
  
 0.806
EFB90366.1
Glycine/sarcosine/betaine reductase component B subunit alpha and beta; Identified by match to protein family HMM PF09338.
 
  
 0.806
grdE-3
Glycine reductase, subunit ABC; Identified by match to protein family HMM PF09338.
 
  
 0.806
EFB90203.1
Putative glycine/sarcosine/betaine reductase complex protein A; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a premature stop.
 
   
 0.790
EFB90204.1
Glycine/sarcosine/betaine reductase complex protein A; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a premature stop.
 
     0.779
Your Current Organism:
Pyramidobacter piscolens
NCBI taxonomy Id: 352165
Other names: P. piscolens W5455, Pyramidobacter piscolens W5455, Pyramidobacter piscolens str. W5455, Pyramidobacter piscolens strain W5455, Synergistetes bacterium W5455
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.