STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
casBCRISPR system CASCADE complex protein CasB; Identified by match to protein family HMM TIGR02548. (211 aa)    
Predicted Functional Partners:
casA
CRISPR system CASCADE complex protein CasA; Identified by match to protein family HMM TIGR02547.
  
 
 0.998
casC
CRISPR system CASCADE complex protein CasC; Identified by match to protein family HMM PF09344; match to protein family HMM TIGR01869.
  
 
 0.996
casD
CRISPR system CASCADE complex protein CasD; Identified by match to protein family HMM PF09708; match to protein family HMM TIGR01868; match to protein family HMM TIGR02593; crispr-associated protein Cas5, ecoli subtype.
  
 
 0.993
EFB90858.1
CRISPR associated protein.
     
 0.823
cas1
CRISPR-associated endonuclease Cas1; CRISPR (clustered regularly interspaced short palindromic repeat), is an adaptive immune system that provides protection against mobile genetic elements (viruses, transposable elements and conjugative plasmids). CRISPR clusters contain spacers, sequences complementary to antecedent mobile elements, and target invading nucleic acids. CRISPR clusters are transcribed and processed into CRISPR RNA (crRNA). Acts as a dsDNA endonuclease. Involved in the integration of spacer DNA into the CRISPR cassette.
  
  
 0.818
cas2
CRISPR-associated endoribonuclease Cas2; Identified by match to protein family HMM PF09707; match to protein family HMM TIGR01873.
       0.787
cas3
CRISPR-associated helicase Cas3; Identified by match to protein family HMM TIGR01587.
  
  
 0.555
EFB90863.1
Hypothetical protein; Identified by glimmer; putative.
       0.468
Your Current Organism:
Pyramidobacter piscolens
NCBI taxonomy Id: 352165
Other names: P. piscolens W5455, Pyramidobacter piscolens W5455, Pyramidobacter piscolens str. W5455, Pyramidobacter piscolens strain W5455, Synergistetes bacterium W5455
Server load: low (30%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.