STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFB89564.1TRAP transporter solute receptor, DctP family; Identified by match to protein family HMM PF03480. (330 aa)    
Predicted Functional Partners:
EFB89562.1
TRAP transporter, DctM subunit; Identified by match to protein family HMM PF06808; match to protein family HMM TIGR00786.
 
    0.896
EFB90744.1
TRAP transporter, DctQ-like membrane protein; Identified by match to protein family HMM PF04290.
  
    0.807
EFB90643.1
TRAP transporter, DctM subunit; Identified by match to protein family HMM PF06808; match to protein family HMM TIGR00786.
  
    0.787
EFB90743.1
TRAP transporter, DctM subunit; Identified by match to protein family HMM PF06808; match to protein family HMM TIGR00786.
  
    0.787
EFB90496.1
TRAP transporter, DctM subunit; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF03600; match to protein family HMM PF06808; match to protein family HMM TIGR00786.
  
    0.787
EFB90931.1
TRAP transporter, DctM subunit; Identified by match to protein family HMM PF03606; match to protein family HMM PF06808; match to protein family HMM TIGR00786.
  
    0.787
EFB89587.1
TRAP transporter, DctM subunit; Identified by match to protein family HMM PF06808; match to protein family HMM TIGR00786.
  
    0.786
EFB91275.1
TRAP transporter, DctM subunit; Identified by match to protein family HMM PF06808; match to protein family HMM TIGR00786.
  
    0.785
EFB90420.1
TRAP transporter, DctM subunit; Identified by match to protein family HMM PF06808; match to protein family HMM TIGR00786.
  
    0.778
EFB90421.1
Bacterial extracellular solute-binding protein, family 7; Identified by match to protein family HMM PF03480.
  
     0.649
Your Current Organism:
Pyramidobacter piscolens
NCBI taxonomy Id: 352165
Other names: P. piscolens W5455, Pyramidobacter piscolens W5455, Pyramidobacter piscolens str. W5455, Pyramidobacter piscolens strain W5455, Synergistetes bacterium W5455
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.