STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cobHprecorrin-8X methylmutase; Identified by match to protein family HMM PF02570. (203 aa)    
Predicted Functional Partners:
cbiT
precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit; This gene contains a nucleotide ambiguity which may be the result of a sequencing error; identified by match to protein family HMM PF00590; match to protein family HMM TIGR02467; match to protein family HMM TIGR02469.
 
 
 0.999
cbiD
Cobalamin biosynthesis protein CbiD; Catalyzes the methylation of C-1 in cobalt-precorrin-5B to form cobalt-precorrin-6A.
  
 0.997
EFB90582.1
Putative precorrin-2 C(20)-methyltransferase; Identified by match to protein family HMM PF00590; Belongs to the precorrin methyltransferase family.
 
 
 0.996
cobJ
precorrin-3B C(17)-methyltransferase; Identified by match to protein family HMM PF00590; match to protein family HMM TIGR01466.
  
 0.994
cobK
precorrin-6A reductase; Identified by match to protein family HMM PF02571; match to protein family HMM TIGR00715; match to protein family HMM TIGR01470.
 
 
 0.993
cobB
Cobyrinic acid a,c-diamide synthase; Catalyzes the ATP-dependent amidation of the two carboxylate groups at positions a and c of cobyrinate, using either L-glutamine or ammonia as the nitrogen source; Belongs to the CobB/CbiA family.
 
 0.992
cobM
Precorrin-4 C(11)-methyltransferase; Identified by match to protein family HMM PF00590; match to protein family HMM TIGR01465; Belongs to the precorrin methyltransferase family.
 
 
 0.991
cobQ
Cobyric acid synthase CobQ; Catalyzes amidations at positions B, D, E, and G on adenosylcobyrinic A,C-diamide. NH(2) groups are provided by glutamine, and one molecule of ATP is hydrogenolyzed for each amidation. Belongs to the CobB/CobQ family. CobQ subfamily.
  
 0.982
EFB89872.1
CbiG; Identified by match to protein family HMM PF01890.
 
 
 0.981
cbiK
Cobalt chelatase (CbiK); Identified by match to protein family HMM PF01903; match to protein family HMM PF06180.
 
  
 0.934
Your Current Organism:
Pyramidobacter piscolens
NCBI taxonomy Id: 352165
Other names: P. piscolens W5455, Pyramidobacter piscolens W5455, Pyramidobacter piscolens str. W5455, Pyramidobacter piscolens strain W5455, Synergistetes bacterium W5455
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