STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFB89703.1ABC 3 transport family protein; Identified by match to protein family HMM PF00950. (283 aa)    
Predicted Functional Partners:
EFB89704.1
ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.
 
 0.998
EFB91634.1
ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.
 
 0.992
EFB89705.1
ABC transporter, substrate-binding protein; Identified by match to protein family HMM PF01297.
 
 
 0.987
EFB89572.1
Putative high-affinity zinc transporter periplasmic component; This gene contains a nucleotide ambiguity which may be the result of a sequencing error.
 
 
 0.953
EFB91633.1
Hypothetical protein; This gene contains a nucleotide ambiguity which may be the result of a sequencing error.
 
 
 0.953
EFB89702.1
Hypothetical protein.
       0.784
EFB90735.1
Hypothetical protein; Identified by glimmer; putative.
  
 
 0.646
EFB89984.1
Hypothetical protein.
   
  
 0.578
EFB90867.1
Iron dependent repressor DNA binding domain protein; Identified by match to protein family HMM PF01325; match to protein family HMM PF02742.
  
 
 0.565
EFB89706.1
Hypothetical protein.
       0.484
Your Current Organism:
Pyramidobacter piscolens
NCBI taxonomy Id: 352165
Other names: P. piscolens W5455, Pyramidobacter piscolens W5455, Pyramidobacter piscolens str. W5455, Pyramidobacter piscolens strain W5455, Synergistetes bacterium W5455
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.