STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFB89887.1ABC transporter, ATP-binding protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a premature stop; identified by match to protein family HMM PF00005. (266 aa)    
Predicted Functional Partners:
EFB89885.1
ABC transporter, permease protein; Identified by match to protein family HMM PF00528.
 
  0.955
EFB90518.1
Efflux ABC transporter, permease protein; Identified by match to protein family HMM PF02687.
 
      0.900
EFB89884.1
ABC transporter, permease protein; Identified by match to protein family HMM PF00528.
 
  0.879
EFB91885.1
ABC transporter, permease protein; Identified by match to protein family HMM PF00528.
 
 
 
  0.859
EFB89882.1
Hypothetical protein; This gene contains a nucleotide ambiguity which may be the result of a sequencing error; identified by glimmer; putative.
 
 
  0.847
EFB91856.1
ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005; match to protein family HMM PF00664.
 
   
 
0.846
EFB90767.1
ABC transporter, permease protein; Identified by match to protein family HMM PF00528.
 
 
 
  0.845
EFB89883.1
Hypothetical protein.
 
 
  0.838
EFB89886.1
ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.
 
    
0.832
EFB91105.1
ABC transporter, permease protein; Identified by match to protein family HMM PF00528.
 
 
  0.821
Your Current Organism:
Pyramidobacter piscolens
NCBI taxonomy Id: 352165
Other names: P. piscolens W5455, Pyramidobacter piscolens W5455, Pyramidobacter piscolens str. W5455, Pyramidobacter piscolens strain W5455, Synergistetes bacterium W5455
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.