Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| EFB89818.1 | EFB89821.1 | HMPREF7215_2633 | HMPREF7215_2636 | Identified by match to protein family HMM PF01248; match to protein family HMM PF04296. | DHHA1 domain protein; Identified by match to protein family HMM PF01368; match to protein family HMM PF02272. | 0.641 |
| EFB89818.1 | EFB89822.1 | HMPREF7215_2633 | HMPREF7215_2637 | Identified by match to protein family HMM PF01248; match to protein family HMM PF04296. | Putative tRNA pseudouridine synthase B; This gene contains a nucleotide ambiguity which may be the result of a sequencing error; identified by match to protein family HMM PF01509; Belongs to the pseudouridine synthase TruB family. | 0.694 |
| EFB89818.1 | infB | HMPREF7215_2633 | HMPREF7215_2634 | Identified by match to protein family HMM PF01248; match to protein family HMM PF04296. | Translation initiation factor IF-2; One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex; Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. IF-2 subfamily. | 0.984 |
| EFB89818.1 | ispF | HMPREF7215_2633 | HMPREF7215_2630 | Identified by match to protein family HMM PF01248; match to protein family HMM PF04296. | 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Involved in the biosynthesis of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP), two major building blocks of isoprenoid compounds. Catalyzes the conversion of 4-diphosphocytidyl-2- C-methyl-D-erythritol 2-phosphate (CDP-ME2P) to 2-C-methyl-D-erythritol 2,4-cyclodiphosphate (ME-CPP) with a corresponding release of cytidine 5-monophosphate (CMP). | 0.785 |
| EFB89818.1 | nusA | HMPREF7215_2633 | HMPREF7215_2632 | Identified by match to protein family HMM PF01248; match to protein family HMM PF04296. | Transcription termination factor NusA; Participates in both transcription termination and antitermination. | 0.985 |
| EFB89818.1 | rbfA | HMPREF7215_2633 | HMPREF7215_2635 | Identified by match to protein family HMM PF01248; match to protein family HMM PF04296. | Ribosome-binding factor A; One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Required for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA. | 0.761 |
| EFB89818.1 | rimP | HMPREF7215_2633 | HMPREF7215_2631 | Identified by match to protein family HMM PF01248; match to protein family HMM PF04296. | Hypothetical protein; Required for maturation of 30S ribosomal subunits. Belongs to the RimP family. | 0.984 |
| EFB89818.1 | rplW | HMPREF7215_2633 | HMPREF7215_0915 | Identified by match to protein family HMM PF01248; match to protein family HMM PF04296. | Ribosomal protein L23; One of the early assembly proteins it binds 23S rRNA. One of the proteins that surrounds the polypeptide exit tunnel on the outside of the ribosome. Forms the main docking site for trigger factor binding to the ribosome; Belongs to the universal ribosomal protein uL23 family. | 0.704 |
| EFB89818.1 | rpsK | HMPREF7215_2633 | HMPREF7215_0892 | Identified by match to protein family HMM PF01248; match to protein family HMM PF04296. | 30S ribosomal protein S11; Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine- Dalgarno cleft in the 70S ribosome; Belongs to the universal ribosomal protein uS11 family. | 0.618 |
| EFB89818.1 | rpsL | HMPREF7215_2633 | HMPREF7215_0921 | Identified by match to protein family HMM PF01248; match to protein family HMM PF04296. | Ribosomal protein S12; Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit. | 0.679 |
| EFB89821.1 | EFB89818.1 | HMPREF7215_2636 | HMPREF7215_2633 | DHHA1 domain protein; Identified by match to protein family HMM PF01368; match to protein family HMM PF02272. | Identified by match to protein family HMM PF01248; match to protein family HMM PF04296. | 0.641 |
| EFB89821.1 | EFB89822.1 | HMPREF7215_2636 | HMPREF7215_2637 | DHHA1 domain protein; Identified by match to protein family HMM PF01368; match to protein family HMM PF02272. | Putative tRNA pseudouridine synthase B; This gene contains a nucleotide ambiguity which may be the result of a sequencing error; identified by match to protein family HMM PF01509; Belongs to the pseudouridine synthase TruB family. | 0.832 |
| EFB89821.1 | infB | HMPREF7215_2636 | HMPREF7215_2634 | DHHA1 domain protein; Identified by match to protein family HMM PF01368; match to protein family HMM PF02272. | Translation initiation factor IF-2; One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex; Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. IF-2 subfamily. | 0.785 |
| EFB89821.1 | nusA | HMPREF7215_2636 | HMPREF7215_2632 | DHHA1 domain protein; Identified by match to protein family HMM PF01368; match to protein family HMM PF02272. | Transcription termination factor NusA; Participates in both transcription termination and antitermination. | 0.670 |
| EFB89821.1 | rbfA | HMPREF7215_2636 | HMPREF7215_2635 | DHHA1 domain protein; Identified by match to protein family HMM PF01368; match to protein family HMM PF02272. | Ribosome-binding factor A; One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Required for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA. | 0.958 |
| EFB89821.1 | rimP | HMPREF7215_2636 | HMPREF7215_2631 | DHHA1 domain protein; Identified by match to protein family HMM PF01368; match to protein family HMM PF02272. | Hypothetical protein; Required for maturation of 30S ribosomal subunits. Belongs to the RimP family. | 0.619 |
| EFB89822.1 | EFB89818.1 | HMPREF7215_2637 | HMPREF7215_2633 | Putative tRNA pseudouridine synthase B; This gene contains a nucleotide ambiguity which may be the result of a sequencing error; identified by match to protein family HMM PF01509; Belongs to the pseudouridine synthase TruB family. | Identified by match to protein family HMM PF01248; match to protein family HMM PF04296. | 0.694 |
| EFB89822.1 | EFB89821.1 | HMPREF7215_2637 | HMPREF7215_2636 | Putative tRNA pseudouridine synthase B; This gene contains a nucleotide ambiguity which may be the result of a sequencing error; identified by match to protein family HMM PF01509; Belongs to the pseudouridine synthase TruB family. | DHHA1 domain protein; Identified by match to protein family HMM PF01368; match to protein family HMM PF02272. | 0.832 |
| EFB89822.1 | infB | HMPREF7215_2637 | HMPREF7215_2634 | Putative tRNA pseudouridine synthase B; This gene contains a nucleotide ambiguity which may be the result of a sequencing error; identified by match to protein family HMM PF01509; Belongs to the pseudouridine synthase TruB family. | Translation initiation factor IF-2; One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex; Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. IF-2 subfamily. | 0.978 |
| EFB89822.1 | ispF | HMPREF7215_2637 | HMPREF7215_2630 | Putative tRNA pseudouridine synthase B; This gene contains a nucleotide ambiguity which may be the result of a sequencing error; identified by match to protein family HMM PF01509; Belongs to the pseudouridine synthase TruB family. | 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Involved in the biosynthesis of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP), two major building blocks of isoprenoid compounds. Catalyzes the conversion of 4-diphosphocytidyl-2- C-methyl-D-erythritol 2-phosphate (CDP-ME2P) to 2-C-methyl-D-erythritol 2,4-cyclodiphosphate (ME-CPP) with a corresponding release of cytidine 5-monophosphate (CMP). | 0.486 |
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