STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFB90947.1Outer membrane protein; Identified by match to protein family HMM PF03938. (141 aa)    
Predicted Functional Partners:
EFB91251.1
Outer membrane protein, OMP85 family; Identified by match to protein family HMM PF01103; match to protein family HMM PF07244.
 
  
 0.946
EFB90951.1
Putative DNA polymerase III, delta subunit; This gene contains a nucleotide ambiguity which may be the result of a sequencing error.
 
     0.821
EFB89524.1
Hypothetical protein; Identified by glimmer; putative.
  
   
 0.788
EFB89522.1
Hypothetical protein; Identified by glimmer; putative.
  
     0.775
EFB90159.1
Hypothetical protein; Identified by glimmer; putative.
  
     0.771
EFB89362.1
Identified by match to protein family HMM PF00395.
  
     0.771
EFB89343.1
Identified by match to protein family HMM PF00395.
  
     0.769
EFB90262.1
Identified by match to protein family HMM PF00395.
  
     0.763
lpxK
Tetraacyldisaccharide 4'-kinase; Transfers the gamma-phosphate of ATP to the 4'-position of a tetraacyldisaccharide 1-phosphate intermediate (termed DS-1-P) to form tetraacyldisaccharide 1,4'-bis-phosphate (lipid IVA).
 
     0.762
EFB90729.1
Hypothetical protein.
  
     0.759
Your Current Organism:
Pyramidobacter piscolens
NCBI taxonomy Id: 352165
Other names: P. piscolens W5455, Pyramidobacter piscolens W5455, Pyramidobacter piscolens str. W5455, Pyramidobacter piscolens strain W5455, Synergistetes bacterium W5455
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.