STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sdaABL-serine dehydratase, iron-sulfur-dependent, beta subunit; Identified by match to protein family HMM PF01842; match to protein family HMM PF03315; match to protein family HMM TIGR00719; Belongs to the iron-sulfur dependent L-serine dehydratase family. (227 aa)    
Predicted Functional Partners:
EFB89333.1
Hypothetical protein; This gene contains a nucleotide ambiguity which may be the result of a sequencing error.
  
  0.992
sdaAA
L-serine dehydratase, iron-sulfur-dependent, alpha subunit; Identified by match to protein family HMM PF03313; match to protein family HMM PF03315; match to protein family HMM TIGR00718; Belongs to the iron-sulfur dependent L-serine dehydratase family.
 
  
 
0.976
sdaAA-2
L-serine dehydratase, iron-sulfur-dependent, alpha subunit; Identified by match to protein family HMM PF03313; match to protein family HMM PF03315; match to protein family HMM TIGR00718; Belongs to the iron-sulfur dependent L-serine dehydratase family.
  
  
 
0.788
EFB89580.1
Hypothetical protein; This gene contains a nucleotide ambiguity which may be the result of a sequencing error.
  
 
 0.750
EFB91135.1
Hypothetical protein; This gene contains a nucleotide ambiguity which may be the result of a sequencing error.
  
 
 0.750
glyA
Glycine hydroxymethyltransferase; This gene contains a nucleotide ambiguity which may be the result of a sequencing error; identified by match to protein family HMM PF00464; match to protein family HMM PF01212.
  
 
 0.750
EFB89331.1
Hypothetical protein; Identified by glimmer; putative.
       0.527
gcvT
Aminomethyltransferase; The glycine cleavage system catalyzes the degradation of glycine.
  
 
 0.409
dpaL
Diaminopropionate ammonia-lyase; Identified by match to protein family HMM PF00291; match to protein family HMM TIGR01747; match to protein family HMM TIGR03528.
   
 
 0.409
EFB89330.1
Hypothetical protein; Identified by glimmer; putative.
       0.401
Your Current Organism:
Pyramidobacter piscolens
NCBI taxonomy Id: 352165
Other names: P. piscolens W5455, Pyramidobacter piscolens W5455, Pyramidobacter piscolens str. W5455, Pyramidobacter piscolens strain W5455, Synergistetes bacterium W5455
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.