Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| EFB89838.1 | EFB90222.1 | HMPREF7215_1463 | HMPREF7215_2693 | Putative cytidine deaminase; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF00383; match to protein family HMM PF08211. | Putative uridine phosphorylase; Identified by match to protein family HMM PF01048. | 0.949 |
| EFB89838.1 | EFB90877.1 | HMPREF7215_1463 | HMPREF7215_1793 | Putative cytidine deaminase; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF00383; match to protein family HMM PF08211. | Hypothetical protein. | 0.782 |
| EFB89838.1 | EFB91022.1 | HMPREF7215_1463 | HMPREF7215_0614 | Putative cytidine deaminase; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF00383; match to protein family HMM PF08211. | Purine nucleoside phosphorylase I, inosine and guanosine-specific; The purine nucleoside phosphorylases catalyze the phosphorolytic breakdown of the N-glycosidic bond in the beta- (deoxy)ribonucleoside molecules, with the formation of the corresponding free purine bases and pentose-1-phosphate. | 0.816 |
| EFB89838.1 | EFB91380.1 | HMPREF7215_1463 | HMPREF7215_2194 | Putative cytidine deaminase; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF00383; match to protein family HMM PF08211. | Kinase, PfkB family; Identified by match to protein family HMM PF00294. | 0.631 |
| EFB89838.1 | EFB91420.1 | HMPREF7215_1463 | HMPREF7215_2532 | Putative cytidine deaminase; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF00383; match to protein family HMM PF08211. | 5'-nucleotidase, C-terminal domain protein; Identified by match to protein family HMM PF00149; match to protein family HMM PF02872; Belongs to the 5'-nucleotidase family. | 0.929 |
| EFB89838.1 | udk | HMPREF7215_1463 | HMPREF7215_0101 | Putative cytidine deaminase; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF00383; match to protein family HMM PF08211. | Identified by match to protein family HMM PF00485. | 0.895 |
| EFB89838.1 | upp | HMPREF7215_1463 | HMPREF7215_0559 | Putative cytidine deaminase; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF00383; match to protein family HMM PF08211. | Uracil phosphoribosyltransferase; Catalyzes the conversion of uracil and 5-phospho-alpha-D- ribose 1-diphosphate (PRPP) to UMP and diphosphate. | 0.868 |
| EFB90222.1 | EFB89838.1 | HMPREF7215_2693 | HMPREF7215_1463 | Putative uridine phosphorylase; Identified by match to protein family HMM PF01048. | Putative cytidine deaminase; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF00383; match to protein family HMM PF08211. | 0.949 |
| EFB90222.1 | EFB90877.1 | HMPREF7215_2693 | HMPREF7215_1793 | Putative uridine phosphorylase; Identified by match to protein family HMM PF01048. | Hypothetical protein. | 0.795 |
| EFB90222.1 | EFB91022.1 | HMPREF7215_2693 | HMPREF7215_0614 | Putative uridine phosphorylase; Identified by match to protein family HMM PF01048. | Purine nucleoside phosphorylase I, inosine and guanosine-specific; The purine nucleoside phosphorylases catalyze the phosphorolytic breakdown of the N-glycosidic bond in the beta- (deoxy)ribonucleoside molecules, with the formation of the corresponding free purine bases and pentose-1-phosphate. | 0.617 |
| EFB90222.1 | EFB91374.1 | HMPREF7215_2693 | HMPREF7215_2188 | Putative uridine phosphorylase; Identified by match to protein family HMM PF01048. | 4Fe-4S binding domain protein; Identified by match to protein family HMM PF00037. | 0.717 |
| EFB90222.1 | EFB91380.1 | HMPREF7215_2693 | HMPREF7215_2194 | Putative uridine phosphorylase; Identified by match to protein family HMM PF01048. | Kinase, PfkB family; Identified by match to protein family HMM PF00294. | 0.651 |
| EFB90222.1 | EFB91420.1 | HMPREF7215_2693 | HMPREF7215_2532 | Putative uridine phosphorylase; Identified by match to protein family HMM PF01048. | 5'-nucleotidase, C-terminal domain protein; Identified by match to protein family HMM PF00149; match to protein family HMM PF02872; Belongs to the 5'-nucleotidase family. | 0.927 |
| EFB90222.1 | pyrD | HMPREF7215_2693 | HMPREF7215_1060 | Putative uridine phosphorylase; Identified by match to protein family HMM PF01048. | Dihydroorotate oxidase; Catalyzes the conversion of dihydroorotate to orotate. | 0.610 |
| EFB90222.1 | pyrE | HMPREF7215_2693 | HMPREF7215_1058 | Putative uridine phosphorylase; Identified by match to protein family HMM PF01048. | Orotate phosphoribosyltransferase; Catalyzes the transfer of a ribosyl phosphate group from 5- phosphoribose 1-diphosphate to orotate, leading to the formation of orotidine monophosphate (OMP). | 0.597 |
| EFB90222.1 | udk | HMPREF7215_2693 | HMPREF7215_0101 | Putative uridine phosphorylase; Identified by match to protein family HMM PF01048. | Identified by match to protein family HMM PF00485. | 0.853 |
| EFB90222.1 | upp | HMPREF7215_2693 | HMPREF7215_0559 | Putative uridine phosphorylase; Identified by match to protein family HMM PF01048. | Uracil phosphoribosyltransferase; Catalyzes the conversion of uracil and 5-phospho-alpha-D- ribose 1-diphosphate (PRPP) to UMP and diphosphate. | 0.643 |
| EFB90877.1 | EFB89838.1 | HMPREF7215_1793 | HMPREF7215_1463 | Hypothetical protein. | Putative cytidine deaminase; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF00383; match to protein family HMM PF08211. | 0.782 |
| EFB90877.1 | EFB90222.1 | HMPREF7215_1793 | HMPREF7215_2693 | Hypothetical protein. | Putative uridine phosphorylase; Identified by match to protein family HMM PF01048. | 0.795 |
| EFB90877.1 | EFB91022.1 | HMPREF7215_1793 | HMPREF7215_0614 | Hypothetical protein. | Purine nucleoside phosphorylase I, inosine and guanosine-specific; The purine nucleoside phosphorylases catalyze the phosphorolytic breakdown of the N-glycosidic bond in the beta- (deoxy)ribonucleoside molecules, with the formation of the corresponding free purine bases and pentose-1-phosphate. | 0.779 |
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