Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| EFB91345.1 | EFB91346.1 | HMPREF7215_2781 | HMPREF7215_2782 | Hypothetical protein; Identified by glimmer; putative. | Phage terminase large subunit (GpA); An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF05876. | 0.791 |
| EFB91345.1 | EFB91347.1 | HMPREF7215_2781 | HMPREF7215_2783 | Hypothetical protein; Identified by glimmer; putative. | Hypothetical protein; Identified by glimmer; putative. | 0.527 |
| EFB91345.1 | EFB91348.1 | HMPREF7215_2781 | HMPREF7215_2784 | Hypothetical protein; Identified by glimmer; putative. | Phage portal protein, lambda family; Identified by match to protein family HMM PF05136; match to protein family HMM TIGR01539. | 0.570 |
| EFB91345.1 | EFB91349.1 | HMPREF7215_2781 | HMPREF7215_2785 | Hypothetical protein; Identified by glimmer; putative. | Caudovirus prohead protease; This gene contains a nucleotide ambiguity which may be the result of a sequencing error; identified by match to protein family HMM PF04586. | 0.557 |
| EFB91346.1 | EFB91345.1 | HMPREF7215_2782 | HMPREF7215_2781 | Phage terminase large subunit (GpA); An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF05876. | Hypothetical protein; Identified by glimmer; putative. | 0.791 |
| EFB91346.1 | EFB91347.1 | HMPREF7215_2782 | HMPREF7215_2783 | Phage terminase large subunit (GpA); An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF05876. | Hypothetical protein; Identified by glimmer; putative. | 0.527 |
| EFB91346.1 | EFB91348.1 | HMPREF7215_2782 | HMPREF7215_2784 | Phage terminase large subunit (GpA); An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF05876. | Phage portal protein, lambda family; Identified by match to protein family HMM PF05136; match to protein family HMM TIGR01539. | 0.924 |
| EFB91346.1 | EFB91349.1 | HMPREF7215_2782 | HMPREF7215_2785 | Phage terminase large subunit (GpA); An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF05876. | Caudovirus prohead protease; This gene contains a nucleotide ambiguity which may be the result of a sequencing error; identified by match to protein family HMM PF04586. | 0.898 |
| EFB91347.1 | EFB91345.1 | HMPREF7215_2783 | HMPREF7215_2781 | Hypothetical protein; Identified by glimmer; putative. | Hypothetical protein; Identified by glimmer; putative. | 0.527 |
| EFB91347.1 | EFB91346.1 | HMPREF7215_2783 | HMPREF7215_2782 | Hypothetical protein; Identified by glimmer; putative. | Phage terminase large subunit (GpA); An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF05876. | 0.527 |
| EFB91347.1 | EFB91348.1 | HMPREF7215_2783 | HMPREF7215_2784 | Hypothetical protein; Identified by glimmer; putative. | Phage portal protein, lambda family; Identified by match to protein family HMM PF05136; match to protein family HMM TIGR01539. | 0.773 |
| EFB91347.1 | EFB91349.1 | HMPREF7215_2783 | HMPREF7215_2785 | Hypothetical protein; Identified by glimmer; putative. | Caudovirus prohead protease; This gene contains a nucleotide ambiguity which may be the result of a sequencing error; identified by match to protein family HMM PF04586. | 0.773 |
| EFB91348.1 | EFB91345.1 | HMPREF7215_2784 | HMPREF7215_2781 | Phage portal protein, lambda family; Identified by match to protein family HMM PF05136; match to protein family HMM TIGR01539. | Hypothetical protein; Identified by glimmer; putative. | 0.570 |
| EFB91348.1 | EFB91346.1 | HMPREF7215_2784 | HMPREF7215_2782 | Phage portal protein, lambda family; Identified by match to protein family HMM PF05136; match to protein family HMM TIGR01539. | Phage terminase large subunit (GpA); An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF05876. | 0.924 |
| EFB91348.1 | EFB91347.1 | HMPREF7215_2784 | HMPREF7215_2783 | Phage portal protein, lambda family; Identified by match to protein family HMM PF05136; match to protein family HMM TIGR01539. | Hypothetical protein; Identified by glimmer; putative. | 0.773 |
| EFB91348.1 | EFB91349.1 | HMPREF7215_2784 | HMPREF7215_2785 | Phage portal protein, lambda family; Identified by match to protein family HMM PF05136; match to protein family HMM TIGR01539. | Caudovirus prohead protease; This gene contains a nucleotide ambiguity which may be the result of a sequencing error; identified by match to protein family HMM PF04586. | 0.952 |
| EFB91349.1 | EFB91345.1 | HMPREF7215_2785 | HMPREF7215_2781 | Caudovirus prohead protease; This gene contains a nucleotide ambiguity which may be the result of a sequencing error; identified by match to protein family HMM PF04586. | Hypothetical protein; Identified by glimmer; putative. | 0.557 |
| EFB91349.1 | EFB91346.1 | HMPREF7215_2785 | HMPREF7215_2782 | Caudovirus prohead protease; This gene contains a nucleotide ambiguity which may be the result of a sequencing error; identified by match to protein family HMM PF04586. | Phage terminase large subunit (GpA); An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF05876. | 0.898 |
| EFB91349.1 | EFB91347.1 | HMPREF7215_2785 | HMPREF7215_2783 | Caudovirus prohead protease; This gene contains a nucleotide ambiguity which may be the result of a sequencing error; identified by match to protein family HMM PF04586. | Hypothetical protein; Identified by glimmer; putative. | 0.773 |
| EFB91349.1 | EFB91348.1 | HMPREF7215_2785 | HMPREF7215_2784 | Caudovirus prohead protease; This gene contains a nucleotide ambiguity which may be the result of a sequencing error; identified by match to protein family HMM PF04586. | Phage portal protein, lambda family; Identified by match to protein family HMM PF05136; match to protein family HMM TIGR01539. | 0.952 |