STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFB89918.1Hypothetical protein. (201 aa)    
Predicted Functional Partners:
EFB89916.1
Hypothetical protein.
  
    0.816
EFB89921.1
Hypothetical protein.
  
    0.789
EFB89919.1
Hypothetical protein; Identified by glimmer; putative.
       0.787
EFB89920.1
Hypothetical protein.
       0.787
EFB89917.1
Hypothetical protein; Identified by glimmer; putative.
       0.773
EFB89922.1
Putative phage major tail tube protein.
       0.757
EFB89915.1
Hypothetical protein; This gene contains a nucleotide ambiguity which may be the result of a sequencing error.
       0.697
EFB89923.1
Hypothetical protein; Identified by glimmer; putative.
       0.567
EFB89924.1
Phage tail tape measure protein, TP901 family; This gene contains a nucleotide ambiguity which may be the result of a sequencing error; identified by match to protein family HMM TIGR01760.
       0.400
Your Current Organism:
Pyramidobacter piscolens
NCBI taxonomy Id: 352165
Other names: P. piscolens W5455, Pyramidobacter piscolens W5455, Pyramidobacter piscolens str. W5455, Pyramidobacter piscolens strain W5455, Synergistetes bacterium W5455
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.