STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFB89921.1Hypothetical protein. (493 aa)    
Predicted Functional Partners:
EFB89922.1
Putative phage major tail tube protein.
 
 
 0.999
EFB91541.1
Phage late control gene D protein (GPD); Identified by match to protein family HMM PF05954.
 
 
 0.998
EFB91546.1
Putative lysozyme; Identified by match to protein family HMM PF04965.
  
 
 0.996
EFB91548.1
Phage tail protein; Identified by match to protein family HMM PF09684.
 
 
 0.994
EFB91545.1
Hypothetical protein.
 
 
 0.993
EFB91547.1
Baseplate J-like protein; Identified by match to protein family HMM PF04865.
 
   0.993
EFB91549.1
Hypothetical protein.
 
  
 0.973
EFB91540.1
Hypothetical protein.
  
   0.971
EFB91346.1
Phage terminase large subunit (GpA); An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF05876.
 
  
 0.965
EFB91542.1
Phage-related baseplate assembly protein.
  
 
 0.961
Your Current Organism:
Pyramidobacter piscolens
NCBI taxonomy Id: 352165
Other names: P. piscolens W5455, Pyramidobacter piscolens W5455, Pyramidobacter piscolens str. W5455, Pyramidobacter piscolens strain W5455, Synergistetes bacterium W5455
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.