STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFB91546.1Putative lysozyme; Identified by match to protein family HMM PF04965. (103 aa)    
Predicted Functional Partners:
EFB91541.1
Phage late control gene D protein (GPD); Identified by match to protein family HMM PF05954.
  
 
 0.997
EFB89921.1
Hypothetical protein.
  
 
 0.996
EFB91548.1
Phage tail protein; Identified by match to protein family HMM PF09684.
  
 
 0.994
EFB91545.1
Hypothetical protein.
  
 
 0.993
EFB91547.1
Baseplate J-like protein; Identified by match to protein family HMM PF04865.
  
 
 0.993
EFB91542.1
Phage-related baseplate assembly protein.
  
 
 0.984
EFB91540.1
Hypothetical protein.
  
 
 0.983
EFB89922.1
Putative phage major tail tube protein.
  
   0.966
EFB91549.1
Hypothetical protein.
  
  
 0.966
EFB89354.1
Identified by match to protein family HMM PF07411.
   
   0.956
Your Current Organism:
Pyramidobacter piscolens
NCBI taxonomy Id: 352165
Other names: P. piscolens W5455, Pyramidobacter piscolens W5455, Pyramidobacter piscolens str. W5455, Pyramidobacter piscolens strain W5455, Synergistetes bacterium W5455
Server load: low (28%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.