STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cgd3_2040Cca1p, tRNA adenylyltransferase; Belongs to the tRNA nucleotidyltransferase/poly(A) polymerase family. (673 aa)    
Predicted Functional Partners:
cgd2_2420
Yd1036cp-like RluD, S4+type 1 pseudouridine synthase.
  
  
 0.847
cgd4_3880
Emap RNA binding domain protein (N terminal low complexity region).
  
 
 0.845
cgd2_2890
Putative biotin-(Acetyl-CoA carboxylase) ligase.
  
  
 0.825
cgd7_1580
Mbl domain containing protein.
  
  
 0.814
cgd7_2060
Vacuolar protein sorting-associated protein 29; Belongs to the VPS29 family.
  
 
 0.710
Cbf5p
H/ACA ribonucleoprotein complex subunit 4.
  
  
 0.703
cgd2_2090
Mitotic control protein dis3, putative; Belongs to the RNR ribonuclease family.
  
 0.693
cgd8_5150
Ssd1p/F48E8.6-like RNAseII.
  
 0.693
cgd6_960
Cysteinyl-tRNA synthetase.
  
  
 0.673
cgd6_2540
tRNA delta(2)-isopentenylpyrophosphate transferase, putative; Belongs to the IPP transferase family.
  
  
 0.672
Your Current Organism:
Cryptosporidium parvum
NCBI taxonomy Id: 353152
Other names: C. parvum Iowa II, Cryptosporidium parvum Iowa II, Cryptosporidium parvum strain Iowa type II
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