STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ORA83577.1Peptidase M24 family protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the peptidase M24B family. (376 aa)    
Predicted Functional Partners:
ORA83371.1
Flap endonuclease; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.790
gcvT
Glycine cleavage system protein T; The glycine cleavage system catalyzes the degradation of glycine.
  
 0.715
ORA76910.1
Ectoine hydroxylase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.701
ectC
L-ectoine synthase; Catalyzes the circularization of gamma-N-acetyl-alpha,gamma- diaminobutyric acid (ADABA) to ectoine (1,4,5,6-tetrahydro-2-methyl-4- pyrimidine carboxylic acid), which is an excellent osmoprotectant.
    
  0.656
ORA79364.1
N-acetyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 
 0.583
ORA82247.1
Creatinine amidohydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
  0.559
ORA81991.1
Mycofactocin biosynthesis peptidyl-dipeptidase MftE; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
  0.559
BST28_11590
Alcohol dehydrogenase; Incomplete; partial in the middle of a contig; missing start; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
  0.559
aroB
3-dehydroquinate synthase; Catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) to dehydroquinate (DHQ).
    
  0.536
ORA75818.1
Shikimate dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the shikimate dehydrogenase family.
    
  0.536
Your Current Organism:
Mycolicibacter kumamotonensis
NCBI taxonomy Id: 354243
Other names: CCUG 51961, DSM 45093, GTC 2729, JCM 13453, M. kumamotonensis, Mycobacterium kumamotoense, Mycobacterium kumamotonense, Mycobacterium kumamotonense Masaki et al. 2007, Mycolicibacter kumamotonensis (Masaki et al. 2007) Gupta et al. 2018, strain CST 7247
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