STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEN26736.1Photosynthetic reaction center cytochrome C subunit. (155 aa)    
Predicted Functional Partners:
SEN61615.1
Conserved hypothetical protein.
   
 
 0.978
SEP34635.1
Hypothetical protein.
   
 
 0.978
SEO77207.1
Membrane protein YdbS, contains bPH2 (pleckstrin homology) domain.
   
    0.714
SEN87806.1
Protein of unknown function.
  
     0.519
SEN10225.1
Hypothetical protein.
  
     0.491
SEO09484.1
Hypothetical protein.
  
     0.459
SEO99900.1
Hypothetical protein.
  
     0.454
SEN28572.1
Hypothetical protein.
  
     0.439
SEO08248.1
Family of unknown function.
  
     0.425
SEN11016.1
Hypothetical protein.
  
     0.416
Your Current Organism:
Niastella yeongjuensis
NCBI taxonomy Id: 354355
Other names: DSM 17621, KACC 11466, N. yeongjuensis, Niastella yeongjuensis Weon et al. 2006, strain GR20-13
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.