STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEN85659.1Transcriptional regulator containing GAF, AAA-type ATPase, and DNA-binding Fis domains. (876 aa)    
Predicted Functional Partners:
SEP47833.1
Signal transduction histidine kinase.
   
 0.963
SEO37811.1
Signal transduction histidine kinase.
   
 0.896
SEO86208.1
PAS domain S-box-containing protein.
   
 0.890
SEO83810.1
Signal transduction histidine kinase.
   
 0.885
SEO83591.1
Response regulator receiver domain-containing protein.
   
 0.873
SEN37848.1
RNA polymerase, sigma 54 subunit, RpoN/SigL.
 
   
 0.793
SEN62106.1
RNA polymerase, sigma 54 subunit, RpoN/SigL.
 
   
 0.792
SEN29600.1
PAS domain S-box-containing protein.
 
 
 0.775
SEN39586.1
PAS domain S-box-containing protein.
   
 0.767
SEP46066.1
His Kinase A (phospho-acceptor) domain-containing protein.
   
 0.767
Your Current Organism:
Niastella yeongjuensis
NCBI taxonomy Id: 354355
Other names: DSM 17621, KACC 11466, N. yeongjuensis, Niastella yeongjuensis Weon et al. 2006, strain GR20-13
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