STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEO00608.1Predicted transcriptional regulator. (123 aa)    
Predicted Functional Partners:
SEO00576.1
N-acetylmuramoyl-L-alanine amidase.
 
 
 0.947
SEO08998.1
Signal transducer regulating beta-lactamase production, contains metallopeptidase domain.
 
 
 0.931
SEP47487.1
Signal transducer regulating beta-lactamase production, contains metallopeptidase domain.
 
 
 0.883
SEP41867.1
Signal transducer regulating beta-lactamase production, contains metallopeptidase domain.
 
 
 0.864
SEN14153.1
Signal transducer regulating beta-lactamase production, contains metallopeptidase domain.
 
 
 0.862
SEO09028.1
Predicted transcriptional regulator.
  
  
 
0.818
SEP47483.1
Predicted transcriptional regulator.
  
  
 
0.556
SEP41858.1
Predicted transcriptional regulator.
  
  
 
0.479
SEO00547.1
Transcriptional regulator, DeoR family.
       0.459
SEO08894.1
Copper chaperone CopZ.
  
  
 0.442
Your Current Organism:
Niastella yeongjuensis
NCBI taxonomy Id: 354355
Other names: DSM 17621, KACC 11466, N. yeongjuensis, Niastella yeongjuensis Weon et al. 2006, strain GR20-13
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.