STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEO00820.1Putative efflux protein, MATE family. (452 aa)    
Predicted Functional Partners:
SEP44774.1
Small subunit ribosomal protein S1.
   
    0.770
SEN62565.1
Glyceraldehyde 3-phosphate dehydrogenase; Belongs to the glyceraldehyde-3-phosphate dehydrogenase family.
   
  
 0.715
SEN87448.1
Glyceraldehyde 3-phosphate dehydrogenase; Belongs to the glyceraldehyde-3-phosphate dehydrogenase family.
   
  
 0.715
SEO00894.1
16S rRNA (guanine(966)-N(2))-methyltransferase RsmD.
       0.591
SEO67066.1
Hypothetical protein.
  
     0.585
SEO00859.1
Protein of unknown function.
  
    0.544
SEN83141.1
Hypothetical protein.
  
     0.542
SEN25767.1
Hypothetical protein.
 
     0.522
SEO94277.1
Hypothetical protein.
  
     0.521
rplR
Large subunit ribosomal protein L18; This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance.
     
 0.486
Your Current Organism:
Niastella yeongjuensis
NCBI taxonomy Id: 354355
Other names: DSM 17621, KACC 11466, N. yeongjuensis, Niastella yeongjuensis Weon et al. 2006, strain GR20-13
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.