STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEO06506.1Putative virulence factor. (948 aa)    
Predicted Functional Partners:
SEO06552.1
Hypothetical protein.
 
  
 0.959
SEO06434.1
Hypothetical protein.
       0.770
SEO06472.1
Serine protease, subtilisin family.
       0.768
SEO06393.1
Hypothetical protein.
       0.702
SEO06323.1
Hypothetical protein.
       0.681
SEO06362.1
Hypothetical protein.
       0.681
SEO06259.1
Hypothetical protein.
       0.671
SEO06291.1
Hypothetical protein.
       0.671
Your Current Organism:
Niastella yeongjuensis
NCBI taxonomy Id: 354355
Other names: DSM 17621, KACC 11466, N. yeongjuensis, Niastella yeongjuensis Weon et al. 2006, strain GR20-13
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.