STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEO10959.1Starch-binding associating with outer membrane. (525 aa)    
Predicted Functional Partners:
SEO10915.1
TonB-linked outer membrane protein, SusC/RagA family.
 
 
   0.937
SEO10997.1
Repeat domain-containing protein.
 
     0.790
SEP14017.1
Hypothetical protein.
  
 
   0.707
SEO82458.1
TonB-linked outer membrane protein, SusC/RagA family.
  
 
   0.705
SEP14005.1
TonB-linked outer membrane protein, SusC/RagA family.
  
 
   0.705
SEN78517.1
TonB-linked outer membrane protein, SusC/RagA family.
  
     0.704
SEP45500.1
TonB-linked outer membrane protein, SusC/RagA family.
  
 
   0.694
SEP24272.1
Iron complex outermembrane recepter protein.
  
 
   0.692
SEN82093.1
TonB-linked outer membrane protein, SusC/RagA family.
  
 
   0.683
SEO59741.1
TonB-linked outer membrane protein, SusC/RagA family.
  
 
   0.677
Your Current Organism:
Niastella yeongjuensis
NCBI taxonomy Id: 354355
Other names: DSM 17621, KACC 11466, N. yeongjuensis, Niastella yeongjuensis Weon et al. 2006, strain GR20-13
Server load: low (14%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.