STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEO34286.1L-ribulokinase; Belongs to the ribulokinase family. (565 aa)    
Predicted Functional Partners:
araA
L-arabinose isomerase; Catalyzes the conversion of L-arabinose to L-ribulose.
 
 
 0.998
araD
L-ribulose-5-phosphate 4-epimerase.
 
 
 0.996
SEP13672.1
L-arabinose isomerase; Catalyzes the conversion of L-arabinose to L-ribulose.
  
 
 0.981
SEO30143.1
Sugar (pentulose or hexulose) kinase.
 
 
 0.900
SEP37426.1
Ribulose-phosphate 3-epimerase; Belongs to the ribulose-phosphate 3-epimerase family.
 
   
 0.885
SEN23685.1
Ribose 5-phosphate isomerase B.
    
  0.874
SEN82401.1
2-dehydro-3-deoxygluconokinase.
     
 0.792
SEP17089.1
2-dehydro-3-deoxygluconokinase.
     
 0.792
SEO35107.1
Rhamnulose-1-phosphate aldolase/alcohol dehydrogenase.
    
 0.766
SEO02529.1
Xylulokinase.
 
 
 0.584
Your Current Organism:
Niastella yeongjuensis
NCBI taxonomy Id: 354355
Other names: DSM 17621, KACC 11466, N. yeongjuensis, Niastella yeongjuensis Weon et al. 2006, strain GR20-13
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.