STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEO40535.1RecB family exonuclease. (363 aa)    
Predicted Functional Partners:
SEO40572.1
Protein of unknown function.
 
     0.951
SEO40496.1
DNA (cytosine-5)-methyltransferase 1; Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family.
 
    0.906
SEO40455.1
T/G mismatch-specific endonuclease; May nick specific sequences that contain T:G mispairs resulting from m5C-deamination.
 
     0.826
SEO40608.1
Hypothetical protein.
       0.780
SEO15336.1
Lysophospholipase L1.
  
     0.765
SEN04633.1
Hypothetical protein.
  
     0.750
SEP42262.1
Carboxypeptidase regulatory-like domain-containing protein.
  
     0.745
SEO15184.1
Starch-binding associating with outer membrane.
  
     0.655
SEN36484.1
DNA helicase-2 / ATP-dependent DNA helicase PcrA.
   
  0.638
SEO75435.1
UvrD/REP helicase N-terminal domain-containing protein.
   
  0.638
Your Current Organism:
Niastella yeongjuensis
NCBI taxonomy Id: 354355
Other names: DSM 17621, KACC 11466, N. yeongjuensis, Niastella yeongjuensis Weon et al. 2006, strain GR20-13
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.