STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEO57718.1TonB-linked outer membrane protein, SusC/RagA family. (1104 aa)    
Predicted Functional Partners:
SEO57682.1
Starch-binding associating with outer membrane.
 
     0.936
SEO57653.1
Polygalacturonase; Belongs to the glycosyl hydrolase 28 family.
 
     0.792
SEO51357.1
Starch-binding associating with outer membrane.
  
     0.773
SEN81730.1
Starch-binding associating with outer membrane.
  
     0.772
SEN81647.1
Starch-binding associating with outer membrane.
  
     0.771
SEO14246.1
Starch-binding associating with outer membrane.
  
     0.723
SEP42186.1
Starch-binding associating with outer membrane.
  
     0.697
SEO82420.1
SusD family protein.
  
     0.693
SEP02368.1
Starch-binding associating with outer membrane.
  
     0.682
SEN78566.1
Starch-binding associating with outer membrane.
  
     0.677
Your Current Organism:
Niastella yeongjuensis
NCBI taxonomy Id: 354355
Other names: DSM 17621, KACC 11466, N. yeongjuensis, Niastella yeongjuensis Weon et al. 2006, strain GR20-13
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.