STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEO78486.1Uncharacterized conserved protein, implicated in type VI secretion and phage assembly. (606 aa)    
Predicted Functional Partners:
SEO78595.1
Hypothetical protein.
 
  
 0.966
SEO78800.1
Hypothetical protein.
 
 
 0.963
SEO78517.1
Hypothetical protein.
 
    0.913
SEO78546.1
Hypothetical protein.
 
  
 0.880
SEO78407.1
RHS repeat-associated core domain-containing protein.
 
    0.875
SEO78569.1
Hypothetical protein.
 
   
 0.861
SEO78840.1
Hypothetical protein.
 
  
 0.856
SEO78739.1
Hypothetical protein.
 
  
 0.838
SEO78868.1
Gene 25-like lysozyme.
 
  
 0.830
SEO78655.1
PKD domain-containing protein.
 
     0.804
Your Current Organism:
Niastella yeongjuensis
NCBI taxonomy Id: 354355
Other names: DSM 17621, KACC 11466, N. yeongjuensis, Niastella yeongjuensis Weon et al. 2006, strain GR20-13
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