STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEP10884.1Transglutaminase-like superfamily protein. (665 aa)    
Predicted Functional Partners:
SEP10856.1
Hypothetical protein.
 
     0.950
SEP33570.1
Protein of unknown function.
 
     0.740
SEP10831.1
Hypothetical protein.
       0.732
SEO04885.1
Carboxypeptidase regulatory-like domain-containing protein.
  
     0.687
SEP33543.1
Antitoxin component YwqK of the YwqJK toxin-antitoxin module.
 
     0.605
SEO76265.1
Gliding motility-associated C-terminal domain-containing protein.
  
     0.601
SEN85387.1
Protein of unknown function.
  
     0.559
SEP10928.1
Protein of unknown function.
 
     0.511
SEO09175.1
AsmA-like C-terminal region.
  
     0.510
SEP10971.1
Hypothetical protein.
 
     0.488
Your Current Organism:
Niastella yeongjuensis
NCBI taxonomy Id: 354355
Other names: DSM 17621, KACC 11466, N. yeongjuensis, Niastella yeongjuensis Weon et al. 2006, strain GR20-13
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