STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEP11073.1Hypothetical protein. (357 aa)    
Predicted Functional Partners:
SEP00956.1
Glycosyl hydrolases family 43; Belongs to the glycosyl hydrolase 43 family.
     0.921
SEP11052.1
Beta-xylosidase; Belongs to the glycosyl hydrolase 43 family.
     0.835
SEN97702.1
Carbohydrate binding domain-containing protein.
  
  
  0.730
SEO34506.1
Lysophospholipase L1.
  
     0.681
SEP14078.1
Alpha-L-arabinofuranosidase.
  
  
  0.675
SEP14277.1
Protein of unknown function.
  
     0.665
SEO34931.1
Lysophospholipase L1.
  
     0.660
SEO34541.1
Rhamnogalacturonan endolyase.
  
 
  0.612
SEO30577.1
F5/8 type C domain-containing protein; Belongs to the glycosyl hydrolase 43 family.
 
     0.592
SEP47927.1
Carbohydrate binding module (family 6).
  
 
  0.590
Your Current Organism:
Niastella yeongjuensis
NCBI taxonomy Id: 354355
Other names: DSM 17621, KACC 11466, N. yeongjuensis, Niastella yeongjuensis Weon et al. 2006, strain GR20-13
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