STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEP30870.1Transcriptional regulator, TetR family. (210 aa)    
Predicted Functional Partners:
SEP30848.1
Starch-binding associating with outer membrane.
 
     0.816
SEP30859.1
TonB-linked outer membrane protein, SusC/RagA family.
 
     0.776
SEP30876.1
Hypothetical protein.
 
     0.767
SEO52190.1
Hypothetical protein.
  
     0.529
SEP46879.1
Protein of unknown function.
  
     0.485
SEP46883.1
Starch-binding associating with outer membrane.
  
     0.456
SEP30838.1
40-residue YVTN family beta-propeller repeat-containing protein.
       0.437
SEO53420.1
Hypothetical protein.
  
     0.435
SEN98665.1
Starch-binding associating with outer membrane.
  
     0.428
SEP42262.1
Carboxypeptidase regulatory-like domain-containing protein.
  
     0.424
Your Current Organism:
Niastella yeongjuensis
NCBI taxonomy Id: 354355
Other names: DSM 17621, KACC 11466, N. yeongjuensis, Niastella yeongjuensis Weon et al. 2006, strain GR20-13
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.