STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEP34249.1CarboxypepD_reg-like domain-containing protein. (821 aa)    
Predicted Functional Partners:
SEP34225.1
Hypothetical protein.
 
     0.646
SEP34211.1
Penicillin amidase.
 
     0.599
SEP26332.1
WD40-like Beta Propeller Repeat.
 
  
  0.564
SEP34237.1
Uncharacterized membrane protein YckC, RDD family.
       0.545
SEP34259.1
UPF0176 protein; Belongs to the UPF0176 family.
       0.520
SEO14184.1
Two component regulator propeller.
    
   0.450
SEO57756.1
Two component regulator propeller.
    
   0.450
SEO04885.1
Carboxypeptidase regulatory-like domain-containing protein.
  
     0.438
SEP44158.1
Outer membrane lipoprotein-sorting protein.
  
     0.434
SEO96500.1
Outer membrane protein beta-barrel family protein.
  
     0.419
Your Current Organism:
Niastella yeongjuensis
NCBI taxonomy Id: 354355
Other names: DSM 17621, KACC 11466, N. yeongjuensis, Niastella yeongjuensis Weon et al. 2006, strain GR20-13
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.