Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SEN17818.1 | SEP39030.1 | SAMN05660816_00373 | SAMN05660816_05673 | DNA repair photolyase. | ATP-dependent helicase Lhr and Lhr-like helicase. | 0.434 |
SEP38973.1 | SEP38985.1 | SAMN05660816_05668 | SAMN05660816_05669 | Putative mRNA 3-end processing factor. | DNA ligase-1. | 0.998 |
SEP38973.1 | SEP39030.1 | SAMN05660816_05668 | SAMN05660816_05673 | Putative mRNA 3-end processing factor. | ATP-dependent helicase Lhr and Lhr-like helicase. | 0.800 |
SEP38973.1 | SEP39282.1 | SAMN05660816_05668 | SAMN05660816_05701 | Putative mRNA 3-end processing factor. | Putative phosphoesterase. | 0.798 |
SEP38985.1 | SEP38973.1 | SAMN05660816_05669 | SAMN05660816_05668 | DNA ligase-1. | Putative mRNA 3-end processing factor. | 0.998 |
SEP38985.1 | SEP39030.1 | SAMN05660816_05669 | SAMN05660816_05673 | DNA ligase-1. | ATP-dependent helicase Lhr and Lhr-like helicase. | 0.805 |
SEP38985.1 | SEP39282.1 | SAMN05660816_05669 | SAMN05660816_05701 | DNA ligase-1. | Putative phosphoesterase. | 0.808 |
SEP39007.1 | SEP39019.1 | SAMN05660816_05671 | SAMN05660816_05672 | Por secretion system C-terminal sorting domain-containing protein. | Hypothetical protein. | 0.620 |
SEP39007.1 | SEP39030.1 | SAMN05660816_05671 | SAMN05660816_05673 | Por secretion system C-terminal sorting domain-containing protein. | ATP-dependent helicase Lhr and Lhr-like helicase. | 0.466 |
SEP39019.1 | SEP39007.1 | SAMN05660816_05672 | SAMN05660816_05671 | Hypothetical protein. | Por secretion system C-terminal sorting domain-containing protein. | 0.620 |
SEP39019.1 | SEP39030.1 | SAMN05660816_05672 | SAMN05660816_05673 | Hypothetical protein. | ATP-dependent helicase Lhr and Lhr-like helicase. | 0.571 |
SEP39030.1 | SEN17818.1 | SAMN05660816_05673 | SAMN05660816_00373 | ATP-dependent helicase Lhr and Lhr-like helicase. | DNA repair photolyase. | 0.434 |
SEP39030.1 | SEP38973.1 | SAMN05660816_05673 | SAMN05660816_05668 | ATP-dependent helicase Lhr and Lhr-like helicase. | Putative mRNA 3-end processing factor. | 0.800 |
SEP39030.1 | SEP38985.1 | SAMN05660816_05673 | SAMN05660816_05669 | ATP-dependent helicase Lhr and Lhr-like helicase. | DNA ligase-1. | 0.805 |
SEP39030.1 | SEP39007.1 | SAMN05660816_05673 | SAMN05660816_05671 | ATP-dependent helicase Lhr and Lhr-like helicase. | Por secretion system C-terminal sorting domain-containing protein. | 0.466 |
SEP39030.1 | SEP39019.1 | SAMN05660816_05673 | SAMN05660816_05672 | ATP-dependent helicase Lhr and Lhr-like helicase. | Hypothetical protein. | 0.571 |
SEP39030.1 | SEP39282.1 | SAMN05660816_05673 | SAMN05660816_05701 | ATP-dependent helicase Lhr and Lhr-like helicase. | Putative phosphoesterase. | 0.825 |
SEP39030.1 | SEP48321.1 | SAMN05660816_05673 | SAMN05660816_06750 | ATP-dependent helicase Lhr and Lhr-like helicase. | DNA polymerase-3 subunit epsilon. | 0.771 |
SEP39030.1 | nnrD | SAMN05660816_05673 | SAMN05660816_04282 | ATP-dependent helicase Lhr and Lhr-like helicase. | NAD(P)H-hydrate epimerase; Bifunctional enzyme that catalyzes the epimerization of the S- and R-forms of NAD(P)HX and the dehydration of the S-form of NAD(P)HX at the expense of ADP, which is converted to AMP. This allows the repair of both epimers of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration. Catalyzes the epimerization of the S- and R-forms of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration. This is a prerequisite for the S-specific NAD(P)H-hydrate dehydratase to allow the repair of bot [...] | 0.400 |
SEP39030.1 | radA | SAMN05660816_05673 | SAMN05660816_01133 | ATP-dependent helicase Lhr and Lhr-like helicase. | DNA repair protein RadA/Sms; DNA-dependent ATPase involved in processing of recombination intermediates, plays a role in repairing DNA breaks. Stimulates the branch migration of RecA-mediated strand transfer reactions, allowing the 3' invading strand to extend heteroduplex DNA faster. Binds ssDNA in the presence of ADP but not other nucleotides, has ATPase activity that is stimulated by ssDNA and various branched DNA structures, but inhibited by SSB. Does not have RecA's homology-searching function. | 0.512 |
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