STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEP42177.1TonB-linked outer membrane protein, SusC/RagA family. (1079 aa)    
Predicted Functional Partners:
SEP42186.1
Starch-binding associating with outer membrane.
 
     0.929
SEP33368.1
Starch-binding associating with outer membrane.
  
     0.773
SEO16145.1
Starch-binding associating with outer membrane.
  
     0.771
SEP02368.1
Starch-binding associating with outer membrane.
  
     0.769
SEO37210.1
Starch-binding associating with outer membrane.
  
     0.762
SEO29642.1
Starch-binding associating with outer membrane.
  
     0.754
SEO58342.1
Starch-binding associating with outer membrane.
  
     0.752
SEO80737.1
Starch-binding associating with outer membrane.
  
     0.708
SEO86715.1
SusD family protein.
  
     0.705
SEN31877.1
SusD family protein.
  
     0.700
Your Current Organism:
Niastella yeongjuensis
NCBI taxonomy Id: 354355
Other names: DSM 17621, KACC 11466, N. yeongjuensis, Niastella yeongjuensis Weon et al. 2006, strain GR20-13
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.