STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEP43174.1Helix-turn-helix. (154 aa)    
Predicted Functional Partners:
SEP43169.1
Hypothetical protein.
 
     0.946
SEP43179.1
Predicted hydrolase, HD superfamily.
       0.773
SEP43185.1
Hypothetical protein.
       0.773
SEO65719.1
Nicotinamide-nucleotide amidase; Belongs to the CinA family.
    
 0.527
SEP46353.1
Competence-damaged protein; Belongs to the CinA family.
    
 0.527
SEP47380.1
HTH-type transcriptional regulator, transcriptional repressor of NAD biosynthesis genes.
   
 
  0.522
SEN77587.1
Predicted ABC-type ATPase.
    
 
 0.508
SEO80646.1
Predicted ABC-type ATPase.
    
 
 0.508
SEN60269.1
Bifunctional NMN adenylyltransferase/nudix hydrolase.
   
 
  0.473
Your Current Organism:
Niastella yeongjuensis
NCBI taxonomy Id: 354355
Other names: DSM 17621, KACC 11466, N. yeongjuensis, Niastella yeongjuensis Weon et al. 2006, strain GR20-13
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.