STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEP46687.1Polyhydroxybutyrate depolymerase. (308 aa)    
Predicted Functional Partners:
SEP37016.1
Enterochelin esterase.
   
   0.611
SEP43496.1
Hypothetical protein.
   
   0.611
SEP30997.1
Hypothetical protein.
 
 
 
 0.596
SEO80671.1
Endo-1,4-beta-xylanase.
 
 
   0.560
SEP12479.1
Beta-1,3-glucanase.
 
 
   0.544
SEP14378.1
Endo-1,4-beta-xylanase.
 
 
   0.531
SEO16420.1
Protein of unknown function.
   
   0.469
SEO32381.1
Right handed beta helix region.
   
   0.469
SEP46684.1
Right handed beta helix region.
       0.446
Your Current Organism:
Niastella yeongjuensis
NCBI taxonomy Id: 354355
Other names: DSM 17621, KACC 11466, N. yeongjuensis, Niastella yeongjuensis Weon et al. 2006, strain GR20-13
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.