Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SIP88600.1 | SIP88671.1 | SAMN05421821_10136 | SAMN05421821_10139 | Thiamine-phosphate pyrophosphorylase. | Tyrosine lyase ThiH. | 0.977 |
SIP88600.1 | SIP88695.1 | SAMN05421821_10136 | SAMN05421821_10140 | Thiamine-phosphate pyrophosphorylase. | Adenylyltransferase and sulfurtransferase. | 0.893 |
SIP88600.1 | SIQ06504.1 | SAMN05421821_10136 | SAMN05421821_101579 | Thiamine-phosphate pyrophosphorylase. | Alkaline phosphatase; Belongs to the alkaline phosphatase family. | 0.880 |
SIP88600.1 | SIR35251.1 | SAMN05421821_10136 | SAMN05421821_106285 | Thiamine-phosphate pyrophosphorylase. | Thiamine-phosphate diphosphorylase. | 0.984 |
SIP88600.1 | SIR61348.1 | SAMN05421821_10136 | SAMN05421821_10997 | Thiamine-phosphate pyrophosphorylase. | Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase. | 0.993 |
SIP88600.1 | rsgA | SAMN05421821_10136 | SAMN05421821_102316 | Thiamine-phosphate pyrophosphorylase. | Ribosome biogenesis GTPase; One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Helps release RbfA from mature subunits. May play a role in the assembly of ribosomal proteins into the subunit. Circularly permuted GTPase that catalyzes slow GTP hydrolysis, GTPase activity is stimulated by the 30S ribosomal subunit; Belongs to the TRAFAC class YlqF/YawG GTPase family. RsgA subfamily. | 0.881 |
SIP88600.1 | thiC | SAMN05421821_10136 | SAMN05421821_10135 | Thiamine-phosphate pyrophosphorylase. | Hydroxymethylpyrimidine synthase; Catalyzes the synthesis of the hydroxymethylpyrimidine phosphate (HMP-P) moiety of thiamine from aminoimidazole ribotide (AIR) in a radical S-adenosyl-L-methionine (SAM)-dependent reaction. Belongs to the ThiC family. | 0.965 |
SIP88600.1 | thiE | SAMN05421821_10136 | SAMN05421821_10137 | Thiamine-phosphate pyrophosphorylase. | Thiamine-phosphate diphosphorylase; Condenses 4-methyl-5-(beta-hydroxyethyl)thiazole monophosphate (THZ-P) and 2-methyl-4-amino-5-hydroxymethyl pyrimidine pyrophosphate (HMP-PP) to form thiamine monophosphate (TMP). Belongs to the thiamine-phosphate synthase family. | 0.999 |
SIP88600.1 | thiG | SAMN05421821_10136 | SAMN05421821_10138 | Thiamine-phosphate pyrophosphorylase. | Thiazole-phosphate synthase; Catalyzes the rearrangement of 1-deoxy-D-xylulose 5-phosphate (DXP) to produce the thiazole phosphate moiety of thiamine. Sulfur is provided by the thiocarboxylate moiety of the carrier protein ThiS. In vitro, sulfur can be provided by H(2)S. | 0.991 |
SIP88600.1 | thiL | SAMN05421821_10136 | SAMN05421821_102190 | Thiamine-phosphate pyrophosphorylase. | Thiamine-phosphate kinase; Catalyzes the ATP-dependent phosphorylation of thiamine- monophosphate (TMP) to form thiamine-pyrophosphate (TPP), the active form of vitamin B1; Belongs to the thiamine-monophosphate kinase family. | 0.948 |
SIP88671.1 | SIP88600.1 | SAMN05421821_10139 | SAMN05421821_10136 | Tyrosine lyase ThiH. | Thiamine-phosphate pyrophosphorylase. | 0.977 |
SIP88671.1 | SIP88695.1 | SAMN05421821_10139 | SAMN05421821_10140 | Tyrosine lyase ThiH. | Adenylyltransferase and sulfurtransferase. | 0.881 |
SIP88671.1 | SIR35251.1 | SAMN05421821_10139 | SAMN05421821_106285 | Tyrosine lyase ThiH. | Thiamine-phosphate diphosphorylase. | 0.719 |
SIP88671.1 | SIR61348.1 | SAMN05421821_10139 | SAMN05421821_10997 | Tyrosine lyase ThiH. | Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase. | 0.521 |
SIP88671.1 | thiC | SAMN05421821_10139 | SAMN05421821_10135 | Tyrosine lyase ThiH. | Hydroxymethylpyrimidine synthase; Catalyzes the synthesis of the hydroxymethylpyrimidine phosphate (HMP-P) moiety of thiamine from aminoimidazole ribotide (AIR) in a radical S-adenosyl-L-methionine (SAM)-dependent reaction. Belongs to the ThiC family. | 0.977 |
SIP88671.1 | thiE | SAMN05421821_10139 | SAMN05421821_10137 | Tyrosine lyase ThiH. | Thiamine-phosphate diphosphorylase; Condenses 4-methyl-5-(beta-hydroxyethyl)thiazole monophosphate (THZ-P) and 2-methyl-4-amino-5-hydroxymethyl pyrimidine pyrophosphate (HMP-PP) to form thiamine monophosphate (TMP). Belongs to the thiamine-phosphate synthase family. | 0.962 |
SIP88671.1 | thiG | SAMN05421821_10139 | SAMN05421821_10138 | Tyrosine lyase ThiH. | Thiazole-phosphate synthase; Catalyzes the rearrangement of 1-deoxy-D-xylulose 5-phosphate (DXP) to produce the thiazole phosphate moiety of thiamine. Sulfur is provided by the thiocarboxylate moiety of the carrier protein ThiS. In vitro, sulfur can be provided by H(2)S. | 0.999 |
SIP88695.1 | SIP88600.1 | SAMN05421821_10140 | SAMN05421821_10136 | Adenylyltransferase and sulfurtransferase. | Thiamine-phosphate pyrophosphorylase. | 0.893 |
SIP88695.1 | SIP88671.1 | SAMN05421821_10140 | SAMN05421821_10139 | Adenylyltransferase and sulfurtransferase. | Tyrosine lyase ThiH. | 0.881 |
SIP88695.1 | SIR35251.1 | SAMN05421821_10140 | SAMN05421821_106285 | Adenylyltransferase and sulfurtransferase. | Thiamine-phosphate diphosphorylase. | 0.614 |
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