STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SIQ01337.1Helix-turn-helix domain-containing protein. (291 aa)    
Predicted Functional Partners:
SIS04246.1
Glutamate synthase (NADH) large subunit.
    
  0.613
SIQ01378.1
NAD(P)-dependent dehydrogenase, short-chain alcohol dehydrogenase family.
       0.504
SIR73696.1
AraC-type DNA-binding protein.
  
     0.500
SIS00158.1
AraC-type DNA-binding protein.
  
   0.446
SIR76307.1
Allosteric NADP-dependent malic enzyme.
   
 
  0.432
SIQ75457.1
Transcriptional regulator, AraC family.
  
     0.427
SIR53649.1
Adenylate cyclase, class 3.
   
 
  0.417
Your Current Organism:
Mucilaginibacter lappiensis
NCBI taxonomy Id: 354630
Other names: LMG 25358, LMG:25358, M. lappiensis, Mucilaginibacter lappiensis Mannisto et al. 2010, Mucilaginibacter sp. ANJLI2, Mucilaginibacter sp. MP601, Mucilaginibacter sp. RA1BR4, Sphingobacteriaceae bacterium ANJLI2, strain ANJLI2
Server load: low (22%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.