Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SIQ39290.1 | SIQ39328.1 | SAMN05421821_102363 | SAMN05421821_102364 | Response regulator receiver domain-containing protein. | Hypothetical protein. | 0.604 |
SIQ39290.1 | SIQ39483.1 | SAMN05421821_102363 | SAMN05421821_102367 | Response regulator receiver domain-containing protein. | acyl-[acyl-carrier-protein]--UDP-N- acetylglucosamine O-acyltransferase; Involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell. | 0.571 |
SIQ39290.1 | SIQ39515.1 | SAMN05421821_102363 | SAMN05421821_102368 | Response regulator receiver domain-containing protein. | ABC transporter. | 0.500 |
SIQ39290.1 | lpxC | SAMN05421821_102363 | SAMN05421821_102366 | Response regulator receiver domain-containing protein. | UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase; Catalyzes the hydrolysis of UDP-3-O-myristoyl-N- acetylglucosamine to form UDP-3-O-myristoylglucosamine and acetate, the committed step in lipid A biosynthesis; Belongs to the LpxC family. | 0.730 |
SIQ39290.1 | lpxD | SAMN05421821_102363 | SAMN05421821_102365 | Response regulator receiver domain-containing protein. | UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; Catalyzes the N-acylation of UDP-3-O-acylglucosamine using 3- hydroxyacyl-ACP as the acyl donor. Is involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell. Belongs to the transferase hexapeptide repeat family. LpxD subfamily. | 0.542 |
SIQ39328.1 | SIQ39290.1 | SAMN05421821_102364 | SAMN05421821_102363 | Hypothetical protein. | Response regulator receiver domain-containing protein. | 0.604 |
SIQ39328.1 | SIQ39483.1 | SAMN05421821_102364 | SAMN05421821_102367 | Hypothetical protein. | acyl-[acyl-carrier-protein]--UDP-N- acetylglucosamine O-acyltransferase; Involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell. | 0.514 |
SIQ39328.1 | SIQ39515.1 | SAMN05421821_102364 | SAMN05421821_102368 | Hypothetical protein. | ABC transporter. | 0.523 |
SIQ39328.1 | SIQ39894.1 | SAMN05421821_102364 | SAMN05421821_102378 | Hypothetical protein. | Alanine dehydrogenase. | 0.443 |
SIQ39328.1 | SIR50500.1 | SAMN05421821_102364 | SAMN05421821_1086 | Hypothetical protein. | Deoxyadenosine/deoxycytidine kinase. | 0.437 |
SIQ39328.1 | SIR89281.1 | SAMN05421821_102364 | SAMN05421821_114177 | Hypothetical protein. | BadF-type ATPase. | 0.491 |
SIQ39328.1 | SIS02947.1 | SAMN05421821_102364 | SAMN05421821_11982 | Hypothetical protein. | Hypothetical protein. | 0.756 |
SIQ39328.1 | lpxC | SAMN05421821_102364 | SAMN05421821_102366 | Hypothetical protein. | UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase; Catalyzes the hydrolysis of UDP-3-O-myristoyl-N- acetylglucosamine to form UDP-3-O-myristoylglucosamine and acetate, the committed step in lipid A biosynthesis; Belongs to the LpxC family. | 0.517 |
SIQ39328.1 | lpxD | SAMN05421821_102364 | SAMN05421821_102365 | Hypothetical protein. | UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; Catalyzes the N-acylation of UDP-3-O-acylglucosamine using 3- hydroxyacyl-ACP as the acyl donor. Is involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell. Belongs to the transferase hexapeptide repeat family. LpxD subfamily. | 0.562 |
SIQ39328.1 | pyrE | SAMN05421821_102364 | SAMN05421821_12070 | Hypothetical protein. | Orotate phosphoribosyltransferase; Catalyzes the transfer of a ribosyl phosphate group from 5- phosphoribose 1-diphosphate to orotate, leading to the formation of orotidine monophosphate (OMP). | 0.472 |
SIQ39483.1 | SIQ39290.1 | SAMN05421821_102367 | SAMN05421821_102363 | acyl-[acyl-carrier-protein]--UDP-N- acetylglucosamine O-acyltransferase; Involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell. | Response regulator receiver domain-containing protein. | 0.571 |
SIQ39483.1 | SIQ39328.1 | SAMN05421821_102367 | SAMN05421821_102364 | acyl-[acyl-carrier-protein]--UDP-N- acetylglucosamine O-acyltransferase; Involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell. | Hypothetical protein. | 0.514 |
SIQ39483.1 | SIQ39515.1 | SAMN05421821_102367 | SAMN05421821_102368 | acyl-[acyl-carrier-protein]--UDP-N- acetylglucosamine O-acyltransferase; Involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell. | ABC transporter. | 0.665 |
SIQ39483.1 | lpxC | SAMN05421821_102367 | SAMN05421821_102366 | acyl-[acyl-carrier-protein]--UDP-N- acetylglucosamine O-acyltransferase; Involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell. | UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase; Catalyzes the hydrolysis of UDP-3-O-myristoyl-N- acetylglucosamine to form UDP-3-O-myristoylglucosamine and acetate, the committed step in lipid A biosynthesis; Belongs to the LpxC family. | 0.999 |
SIQ39483.1 | lpxD | SAMN05421821_102367 | SAMN05421821_102365 | acyl-[acyl-carrier-protein]--UDP-N- acetylglucosamine O-acyltransferase; Involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell. | UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; Catalyzes the N-acylation of UDP-3-O-acylglucosamine using 3- hydroxyacyl-ACP as the acyl donor. Is involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell. Belongs to the transferase hexapeptide repeat family. LpxD subfamily. | 0.997 |
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