STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SIQ27559.1Hypothetical protein. (302 aa)    
Predicted Functional Partners:
SIQ27596.1
Type IV secretory system Conjugative DNA transfer.
 
     0.820
SIQ27524.1
Hypothetical protein.
       0.788
SIQ27455.1
Helix-turn-helix domain-containing protein.
 
     0.784
SIR29109.1
Hypothetical protein.
 
     0.681
SIR29071.1
Hypothetical protein.
 
     0.636
SIS11244.1
Hypothetical protein.
  
     0.598
SIP96237.1
Hypothetical protein.
  
     0.594
SIQ26606.1
Hypothetical protein.
  
     0.584
SIQ27888.1
Bacteroides conjugation system ATPase, TraG family.
 
     0.566
SIQ28153.1
Bacteroides conjugative transposon TraK protein.
 
     0.542
Your Current Organism:
Mucilaginibacter lappiensis
NCBI taxonomy Id: 354630
Other names: LMG 25358, LMG:25358, M. lappiensis, Mucilaginibacter lappiensis Mannisto et al. 2010, Mucilaginibacter sp. ANJLI2, Mucilaginibacter sp. MP601, Mucilaginibacter sp. RA1BR4, Sphingobacteriaceae bacterium ANJLI2, strain ANJLI2
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