Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SIP87976.1 | SIR17424.1 | SAMN05421821_1015 | SAMN05421821_105262 | DNA-3-methyladenine glycosylase; Belongs to the DNA glycosylase MPG family. | Exonuclease III. | 0.800 |
SIP87976.1 | SIR67140.1 | SAMN05421821_1015 | SAMN05421821_11027 | DNA-3-methyladenine glycosylase; Belongs to the DNA glycosylase MPG family. | DNA polymerase (family 10). | 0.438 |
SIQ72740.1 | SIR17424.1 | SAMN05421821_103268 | SAMN05421821_105262 | TIGR02757 family protein. | Exonuclease III. | 0.862 |
SIQ72740.1 | SIR34447.1 | SAMN05421821_103268 | SAMN05421821_106255 | TIGR02757 family protein. | DNA-3-methyladenine glycosylase II. | 0.411 |
SIQ72740.1 | SIR67140.1 | SAMN05421821_103268 | SAMN05421821_11027 | TIGR02757 family protein. | DNA polymerase (family 10). | 0.437 |
SIQ72740.1 | SIS07077.1 | SAMN05421821_103268 | SAMN05421821_12233 | TIGR02757 family protein. | A/G-specific DNA-adenine glycosylase; Adenine glycosylase active on G-A mispairs. | 0.536 |
SIQ72740.1 | polA | SAMN05421821_103268 | SAMN05421821_102347 | TIGR02757 family protein. | DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family. | 0.645 |
SIQ72740.1 | ung | SAMN05421821_103268 | SAMN05421821_110192 | TIGR02757 family protein. | Uracil-DNA glycosylase; Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine. | 0.524 |
SIR01701.1 | SIR17424.1 | SAMN05421821_104303 | SAMN05421821_105262 | Hypothetical protein. | Exonuclease III. | 0.913 |
SIR01701.1 | SIR34447.1 | SAMN05421821_104303 | SAMN05421821_106255 | Hypothetical protein. | DNA-3-methyladenine glycosylase II. | 0.497 |
SIR01701.1 | SIR62731.1 | SAMN05421821_104303 | SAMN05421821_109160 | Hypothetical protein. | DNA polymerase-3 subunit beta; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of re [...] | 0.999 |
SIR01701.1 | SIR67140.1 | SAMN05421821_104303 | SAMN05421821_11027 | Hypothetical protein. | DNA polymerase (family 10). | 0.772 |
SIR01701.1 | polA | SAMN05421821_104303 | SAMN05421821_102347 | Hypothetical protein. | DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family. | 0.999 |
SIR17424.1 | SIP87976.1 | SAMN05421821_105262 | SAMN05421821_1015 | Exonuclease III. | DNA-3-methyladenine glycosylase; Belongs to the DNA glycosylase MPG family. | 0.800 |
SIR17424.1 | SIQ72740.1 | SAMN05421821_105262 | SAMN05421821_103268 | Exonuclease III. | TIGR02757 family protein. | 0.862 |
SIR17424.1 | SIR01701.1 | SAMN05421821_105262 | SAMN05421821_104303 | Exonuclease III. | Hypothetical protein. | 0.913 |
SIR17424.1 | SIR34447.1 | SAMN05421821_105262 | SAMN05421821_106255 | Exonuclease III. | DNA-3-methyladenine glycosylase II. | 0.936 |
SIR17424.1 | SIR62731.1 | SAMN05421821_105262 | SAMN05421821_109160 | Exonuclease III. | DNA polymerase-3 subunit beta; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of re [...] | 0.951 |
SIR17424.1 | SIR67140.1 | SAMN05421821_105262 | SAMN05421821_11027 | Exonuclease III. | DNA polymerase (family 10). | 0.919 |
SIR17424.1 | SIS07077.1 | SAMN05421821_105262 | SAMN05421821_12233 | Exonuclease III. | A/G-specific DNA-adenine glycosylase; Adenine glycosylase active on G-A mispairs. | 0.946 |
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