STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SIR42655.1Uncharacterized membrane protein YckC, RDD family. (213 aa)    
Predicted Functional Partners:
SIQ67007.1
Signal transduction histidine kinase.
   
 0.830
SIR76011.1
PAS domain S-box-containing protein.
   
 0.793
ribBA
3,4-dihydroxy 2-butanone 4-phosphate synthase / GTP cyclohydrolase II; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; In the C-terminal section; belongs to the GTP cyclohydrolase II family.
  
 0.790
SIR27539.1
PAS domain S-box-containing protein.
 
 
 0.755
SIQ66881.1
PAS domain S-box-containing protein.
   
 0.749
SIP99406.1
PAS domain S-box-containing protein.
   
 0.718
SIQ29169.1
PAS domain S-box-containing protein.
   
 0.718
SIR42897.1
Signal transduction histidine kinase.
   
 0.718
SIQ09206.1
Signal transduction histidine kinase.
   
 0.712
SIQ03419.1
PAS domain S-box-containing protein.
   
 0.711
Your Current Organism:
Mucilaginibacter lappiensis
NCBI taxonomy Id: 354630
Other names: LMG 25358, LMG:25358, M. lappiensis, Mucilaginibacter lappiensis Mannisto et al. 2010, Mucilaginibacter sp. ANJLI2, Mucilaginibacter sp. MP601, Mucilaginibacter sp. RA1BR4, Sphingobacteriaceae bacterium ANJLI2, strain ANJLI2
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