STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SIR94581.1Polysaccharide deacetylase. (314 aa)    
Predicted Functional Partners:
SIR94561.1
Thiosulfate dehydrogenase [quinone] large subunit.
 
     0.869
SIR94543.1
Hypothetical protein.
       0.481
SIQ71797.1
Ketosteroid isomerase homolog.
  
     0.469
SIR50708.1
CubicO group peptidase, beta-lactamase class C family.
  
     0.456
SIR94601.1
stearoyl-CoA desaturase (delta-9 desaturase).
       0.406
SIQ10923.1
Starch-binding associating with outer membrane.
  
     0.402
SIR94527.1
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain).
       0.400
Your Current Organism:
Mucilaginibacter lappiensis
NCBI taxonomy Id: 354630
Other names: LMG 25358, LMG:25358, M. lappiensis, Mucilaginibacter lappiensis Mannisto et al. 2010, Mucilaginibacter sp. ANJLI2, Mucilaginibacter sp. MP601, Mucilaginibacter sp. RA1BR4, Sphingobacteriaceae bacterium ANJLI2, strain ANJLI2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.